They go left to right, top to bottom, so 1, 2, and 3 are at the top and 4, 5, and 6 are at the bottom, so cell #3 is dead.
Batteries will get warm to extremely warm from flying, the harder you fly the hotter it will be, the goal is to be around 15V when rested (fully cooled, usually after about an hour)
Do not charge until the battery is rested and cool to the touch. If you charge at 1C (1.5 amps for a 1500mah) and the battery is good and undamaged, it will actually get a bit cold as it charges and should never get very warm (or hot) fi charged at 1C. If I have a battery that gets warm instead of cold, I know to keep a close eye on it.
You need telemetry or OSD to have voltage reading, or you just need to land early and see where the battery rests and if it is much over 15.2 after resting you can add 15 or 30 seconds to your timer. I want all my batts to be 14.8v or above once rested and hopefully closer to 15v. You NEED a cheap battery checker if you are going to be in this hobby, it wont be exact but is close enough.